SMTL ID : 6l64.1

X-ray structure of human galectin-10 in complex with D-glucose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

homo-dimer

Ligands

6 x BGC: beta-D-glucopyranose(Non-covalent)

BGC.1: 9 residues within 4Å: Chain A: H.55, Q.57, V.65, N.67, W.74, Q.77, R.130 Chain B: E.35, R.62 8 PLIP interactions: 6 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:H.55, A:Q.57, A:N.67, A:Q.77, A:R.130 Water bridges: A:Q.39, B:N.34 Salt bridges: B:R.62 BGC.2: 6 residues within 4Å: Chain A: Q.103, S.110, S.111, Y.112, T.113 Ligands: BGC.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.110, A:S.110, A:T.113, A:T.113, A:T.113 BGC.3: 4 residues within 4Å: Chain A: T.113, F.114, D.115 Ligands: BGC.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.113, A:D.115 Water bridges: A:R.117 BGC.4: 9 residues within 4Å: Chain A: E.35, R.62 Chain B: H.55, Q.57, V.65, N.67, W.74, Q.77, R.130 8 PLIP interactions: 6 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:H.55, B:Q.57, B:N.67, B:Q.77, B:R.130 Water bridges: B:Q.39, A:N.34 Salt bridges: A:R.62 BGC.5: 6 residues within 4Å: Chain B: Q.103, S.110, S.111, Y.112, T.113 Ligands: BGC.6 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.110, B:S.110, B:T.113, B:T.113 BGC.6: 4 residues within 4Å: Chain B: T.113, F.114, D.115 Ligands: BGC.5 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.113, B:D.115 Water bridges: B:R.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Itoh, A. et al., Structures of human galectin-10/monosaccharide complexes demonstrate potential of monosaccharides as effectors in forming Charcot-Leyden crystals. Biochem.Biophys.Res.Commun. (2020)

Release Date

2020-03-04

Peptides

Galectin-10: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Galectin-10

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