SMTL ID : 6l65.1

Sirtuin 2 protein with H3K18 myristoylated peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x PRO- ARG- LYS- GLN- LEU: PRO-ARG-LYS-GLN-LEU(Non-covalent)

PRO-ARG-LYS-GLN-LEU.1: 16 residues within 4Å: Chain A: R.49, E.68, H.139, V.185, F.186, F.187, G.188, E.189, S.190, L.191, F.196, Q.217, V.218, Q.219, P.220 Ligands: MYR.3 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:E.68, A:V.185, A:F.187, A:F.187, A:L.191, A:F.196, A:Q.219 Hydrogen bonds: A:V.185, A:G.188, A:G.188, A:E.189, A:Q.219, A:Q.219, A:Q.219 Water bridges: A:S.190, A:S.190, A:L.191

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.147, C.152, C.173, C.176 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.147, A:C.152, A:C.173, A:C.176

1 x MYR: MYRISTIC ACID(Non-covalent)

MYR.3: 9 residues within 4Å: Chain A: F.48, F.71, P.92, F.95, H.139, F.142, I.184, V.185 Ligands: PRO-ARG-LYS-GLN-LEU.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.48, A:F.95, A:F.142, A:I.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, L.F., Sirtuin 2 protein with H3K18 myristoylated peptide. To Be Published

Release Date

2020-11-04

Peptides

NAD-dependent protein deacetylase sirtuin-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NAD-dependent protein deacetylase sirtuin-2