SMTL ID : 6l6c.1

X-ray structure of human galectin-10 in complex with D-arabinose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

homo-dimer

Ligands

4 x 64K: alpha-D-arabinopyranose(Non-covalent)

64K.1: 6 residues within 4Å: Chain A: H.55, V.65, N.67, W.74, Q.77 Chain B: E.35 8 PLIP interactions: 7 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:H.55, A:H.55, A:N.67, B:R.62 Water bridges: A:Q.57, A:Q.57, A:K.75, A:Q.77 64K.2: 4 residues within 4Å: Chain A: S.110, S.111, Y.112, T.113 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.110, A:S.110, A:S.110 64K.3: 6 residues within 4Å: Chain A: E.35 Chain B: H.55, V.65, N.67, W.74, Q.77 8 PLIP interactions: 6 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:H.55, B:H.55, B:N.67, A:R.62 Water bridges: B:Q.57, B:K.75, B:Q.77, A:E.35 64K.4: 4 residues within 4Å: Chain B: S.110, S.111, Y.112, T.113 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.110, B:S.110, B:S.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Itoh, A. et al., Structures of human galectin-10/monosaccharide complexes demonstrate potential of monosaccharides as effectors in forming Charcot-Leyden crystals. Biochem.Biophys.Res.Commun. (2020)

Release Date

2020-03-04

Peptides

Galectin-10: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Galectin-10

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