SMTL ID : 6l6n.1

hASIC1a co-crystallized with Nafamostat

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.86 Å

Oligo State

homo-trimer

Ligands

1 x NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose(Post Translational Modification)

NDG.1: 2 residues within 4Å: Chain A: I.271, N.358 No protein-ligand interaction detected (PLIP)

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain A: N.385 No protein-ligand interaction detected (PLIP) NAG.3: 2 residues within 4Å: Chain B: D.243, N.358 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.243 NAG.6: 1 residues within 4Å: Chain C: N.358 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.358, C:E.411 NAG.7: 1 residues within 4Å: Chain C: N.385 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.385

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain B: G.166, G.205, G.207 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain C: N.84, N.86, H.153, K.183 Ligand excluded by PLIP

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 4 residues within 4Å: Chain B: S.91, V.93, S.94, K.131 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:V.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lei, F. et al., hASIC1a co-crystallized with Mamb-1. To Be Published

Release Date

2021-01-13

Peptides

Acid-sensing ion channel 1: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Membrane

We predict this structure to be a membrane protein.
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Acid-sensing ion channel 1

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