SMTL ID : 6l72.1

Sirtuin 2 demyristoylation native final product

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x OMR: [(2S,3R,4R,5R)-5-[[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-2,4-bis(oxidanyl)oxolan-3-yl] tetradecanoate(Non-covalent)

OMR.1: 27 residues within 4Å: Chain A: G.33, A.34, G.35, T.38, D.44, F.45, R.46, Y.53, F.68, L.87, Q.116, I.118, H.136, F.139, I.181, V.182, F.184, G.210, T.211, S.212, V.215, N.235, K.236, E.237, G.271, E.272, C.273 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:F.45, A:F.68, A:L.87, A:L.87, A:I.118, A:F.139, A:F.139 Hydrogen bonds: A:A.34, A:G.35, A:T.38, A:F.45, A:R.46, A:Y.53, A:Y.53, A:Q.116, A:S.212, A:N.235, A:K.236, A:K.236, A:E.237, A:E.237, A:C.273 Water bridges: A:T.38, A:S.39, A:Q.116, A:D.274 Salt bridges: A:R.46, A:R.46, A:H.136 pi-Cation interactions: A:K.236

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.144, C.149, C.170, C.173 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.144, A:C.149, A:C.170, A:C.173

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, L.F., Sirtuin 2 protein with H3K18 myristoylated peptide. To Be Published

Release Date

2021-03-31

Peptides

NAD-dependent protein deacetylase sirtuin-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NAD-dependent protein deacetylase sirtuin-2

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