This entry has been superseded by
7E3V
on Feb. 23, 2022, midnight.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x NI: NICKEL (II) ION(Non-covalent)
- 3 x CS: CESIUM ION(Non-covalent)
CS.2: 4 residues within 4Å:- Chain A: I.47, N.50, C.53, L.55
No protein-ligand interaction detected (PLIP)CS.7: 4 residues within 4Å:- Chain B: I.47, N.50, C.53, L.55
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:I.47, B:C.53, H2O.7
CS.13: 4 residues within 4Å:- Chain C: I.47, N.50, C.53, L.55
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:C.53
- 6 x ZN: ZINC ION(Non-covalent)
ZN.4: 8 residues within 4Å:- Chain A: H.69, H.71, H.74, H.131, D.165
- Ligands: NI.1, NI.3, ZN.5
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.69, A:H.71, A:H.131, A:D.165, H2O.1
ZN.5: 8 residues within 4Å:- Chain A: Q.29, D.73, H.74, D.165, H.216
- Ligands: NI.1, NI.3, ZN.4
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.73, A:H.74, A:D.165, A:H.216, H2O.1
ZN.10: 7 residues within 4Å:- Chain B: H.69, H.71, H.131, D.165
- Ligands: NI.6, NI.9, ZN.11
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:H.69, B:H.71, B:H.131, B:D.165, H2O.5
ZN.11: 7 residues within 4Å:- Chain B: D.73, H.74, D.165, H.216
- Ligands: NI.6, NI.9, ZN.10
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.73, B:H.74, B:D.165, H2O.5, H2O.8
ZN.15: 7 residues within 4Å:- Chain C: H.69, H.71, H.131, D.165
- Ligands: NI.12, NI.14, ZN.16
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:H.69, C:H.71, C:H.131, C:D.165, H2O.8
ZN.16: 7 residues within 4Å:- Chain C: D.73, H.74, D.165, H.216
- Ligands: NI.12, NI.14, ZN.15
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.73, C:H.74, C:D.165, C:H.216, H2O.8
- 1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lee, K.-Y. et al., Metallo beta-lactamase fold protein. To Be Published
- Release Date
- 2021-02-03
- Peptides
- UPF0173 metal-dependent hydrolase C7P97_11315: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DB
EC
F