SMTL ID : 6l8h.3 (3 other biounits)

Crystal structure of CYP97C1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 26 residues within 4Å: Chain A: K.74, F.89, A.90, W.97, R.101, I.156, A.279, G.280, T.283, T.284, V.287, M.337, H.342, P.343, L.346, R.348, P.411, F.412, S.413, R.417, K.418, C.419, V.420, G.421, F.424, A.425 21 PLIP interactions: 20 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:F.89, A:A.90, A:I.156, A:T.283, A:V.287, A:F.412, A:V.420, A:F.424, A:A.425 Hydrogen bonds: A:S.413, A:R.417 Water bridges: A:K.74, A:K.74, A:R.348 Salt bridges: A:K.74, A:R.101, A:R.348, A:R.417 pi-Stacking: A:F.412 Metal complexes: A:C.419, H2O.4

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 1 residues within 4Å: Chain A: G.49 No protein-ligand interaction detected (PLIP) GOL.3: 7 residues within 4Å: Chain A: L.294, K.297, L.339, Y.340, R.377, E.386 Ligands: GOL.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.297, A:Y.340, A:Y.340, A:R.377, A:R.377 Water bridges: A:K.297 GOL.4: 6 residues within 4Å: Chain A: Y.293, Y.340, I.450, S.451, M.452 Ligands: GOL.3 2 PLIP interactions: 2 interactions with chain A Water bridges: A:M.452, A:M.452

1 x SOG: octyl 1-thio-beta-D-glucopyranoside(Non-covalent)

SOG.5: 12 residues within 4Å: Chain A: V.21, L.24, L.25, L.29, A.48, R.51, S.189, P.344, V.345, I.347, T.454, G.455 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.21, A:L.24, A:L.25 Hydrogen bonds: A:G.455 Water bridges: A:L.24, A:S.189, A:T.454

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Niu, G. et al., Structural basis for plant lutein biosynthesis from alpha-carotene. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-06-10

Peptides

Carotene epsilon-monooxygenase, chloroplastic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Carotene epsilon-monooxygenase, chloroplastic

Related Entries With Identical Sequence