SMTL ID : 6l9k.1

H2-Ld a1a2 complexed with A5 peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x SER- PRO- SER- TYR- ALA- TYR- HIS- GLN- PHE: SER-PRO-SER-TYR-ALA-TYR-HIS-GLN-PHE(Non-covalent)

SER-PRO-SER-TYR-ALA-TYR-HIS-GLN-PHE.1: 26 residues within 4Å: Chain A: Y.7, Y.45, R.62, I.63, I.66, Q.70, W.73, V.76, N.77, T.80, L.81, Y.84, L.95, R.97, Y.99, F.116, Y.123, T.143, K.146, W.147, A.152, Y.155, Y.156, Y.159, W.167, Y.171 39 PLIP interactions: 39 interactions with chain A Hydrophobic interactions: A:Y.7, A:Y.45, A:I.66, A:W.73, A:N.77, A:T.80, A:L.81, A:L.81, A:L.95, A:F.116, A:Y.123, A:Y.123, A:Y.123, A:T.143, A:W.147, A:Y.155, A:Y.155 Hydrogen bonds: A:R.62, A:R.62, A:Q.65, A:Q.70, A:Q.70, A:N.77, A:N.77, A:R.97, A:R.97, A:Y.99, A:Y.155, A:Y.156, A:Y.171, A:Y.171 Water bridges: A:G.69, A:Q.70, A:N.77, A:Y.99, A:Y.99, A:W.147 Salt bridges: A:K.146 pi-Stacking: A:W.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wei, P. et al., Structures suggest an approach for converting weak self-peptide tumor antigens into superagonists for CD8 T cells in cancer. Proc.Natl.Acad.Sci.USA (2021)

Release Date

2020-11-18

Peptides

H2-Ld a1a2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

H2-Ld a1a2

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