SMTL ID : 6lbc.1

shrimp ferritin-T158R

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-24-mer

Ligands

24 x FE: FE (III) ION(Non-covalent)

FE.1: 3 residues within 4Å: Chain A: E.24, E.59, H.62 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.24, A:E.59, A:E.59, A:H.62 FE.2: 3 residues within 4Å: Chain B: E.24, E.59, H.62 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.24, B:E.59, B:H.62, H2O.8 FE.3: 3 residues within 4Å: Chain C: E.24, E.59, H.62 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.24, C:E.59, C:H.62, H2O.16 FE.4: 3 residues within 4Å: Chain D: E.24, E.59, H.62 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:E.24, D:E.59, D:H.62, H2O.19, H2O.21 FE.5: 3 residues within 4Å: Chain E: E.24, E.59, H.62 5 PLIP interactions: 3 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:E.24, E:E.59, E:H.62, H2O.26, H2O.28 FE.6: 3 residues within 4Å: Chain F: E.24, E.59, H.62 4 PLIP interactions: 3 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:E.24, F:E.59, F:H.62, H2O.33 FE.7: 3 residues within 4Å: Chain G: E.24, E.59, H.62 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:E.24, G:E.59, G:E.59, G:H.62 FE.8: 3 residues within 4Å: Chain H: E.24, E.59, H.62 4 PLIP interactions: 3 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:E.24, H:E.59, H:H.62, H2O.46 FE.9: 3 residues within 4Å: Chain I: E.24, E.59, H.62 4 PLIP interactions: 3 interactions with chain I, 1 Ligand-Water interactions Metal complexes: I:E.24, I:E.59, I:H.62, H2O.53 FE.10: 3 residues within 4Å: Chain J: E.24, E.59, H.62 5 PLIP interactions: 3 interactions with chain J, 2 Ligand-Water interactions Metal complexes: J:E.24, J:E.59, J:H.62, H2O.56, H2O.59 FE.11: 3 residues within 4Å: Chain K: E.24, E.59, H.62 5 PLIP interactions: 3 interactions with chain K, 2 Ligand-Water interactions Metal complexes: K:E.24, K:E.59, K:H.62, H2O.63, H2O.65 FE.12: 3 residues within 4Å: Chain L: E.24, E.59, H.62 4 PLIP interactions: 3 interactions with chain L, 1 Ligand-Water interactions Metal complexes: L:E.24, L:E.59, L:H.62, H2O.71 FE.13: 3 residues within 4Å: Chain M: E.24, E.59, H.62 4 PLIP interactions: 4 interactions with chain M Metal complexes: M:E.24, M:E.59, M:E.59, M:H.62 FE.14: 3 residues within 4Å: Chain N: E.24, E.59, H.62 4 PLIP interactions: 3 interactions with chain N, 1 Ligand-Water interactions Metal complexes: N:E.24, N:E.59, N:H.62, H2O.84 FE.15: 3 residues within 4Å: Chain O: E.24, E.59, H.62 4 PLIP interactions: 3 interactions with chain O, 1 Ligand-Water interactions Metal complexes: O:E.24, O:E.59, O:H.62, H2O.91 FE.16: 3 residues within 4Å: Chain P: E.24, E.59, H.62 5 PLIP interactions: 3 interactions with chain P, 2 Ligand-Water interactions Metal complexes: P:E.24, P:E.59, P:H.62, H2O.94, H2O.96 FE.17: 3 residues within 4Å: Chain Q: E.24, E.59, H.62 5 PLIP interactions: 3 interactions with chain Q, 2 Ligand-Water interactions Metal complexes: Q:E.24, Q:E.59, Q:H.62, H2O.101, H2O.103 FE.18: 3 residues within 4Å: Chain R: E.24, E.59, H.62 4 PLIP interactions: 3 interactions with chain R, 1 Ligand-Water interactions Metal complexes: R:E.24, R:E.59, R:H.62, H2O.108 FE.19: 3 residues within 4Å: Chain S: E.24, E.59, H.62 4 PLIP interactions: 4 interactions with chain S Metal complexes: S:E.24, S:E.59, S:E.59, S:H.62 FE.20: 3 residues within 4Å: Chain T: E.24, E.59, H.62 4 PLIP interactions: 3 interactions with chain T, 1 Ligand-Water interactions Metal complexes: T:E.24, T:E.59, T:H.62, H2O.121 FE.21: 3 residues within 4Å: Chain U: E.24, E.59, H.62 4 PLIP interactions: 3 interactions with chain U, 1 Ligand-Water interactions Metal complexes: U:E.24, U:E.59, U:H.62, H2O.128 FE.22: 3 residues within 4Å: Chain V: E.24, E.59, H.62 5 PLIP interactions: 3 interactions with chain V, 2 Ligand-Water interactions Metal complexes: V:E.24, V:E.59, V:H.62, H2O.132, H2O.134 FE.23: 3 residues within 4Å: Chain W: E.24, E.59, H.62 5 PLIP interactions: 3 interactions with chain W, 2 Ligand-Water interactions Metal complexes: W:E.24, W:E.59, W:H.62, H2O.139, H2O.141 FE.24: 3 residues within 4Å: Chain X: E.24, E.59, H.62 4 PLIP interactions: 3 interactions with chain X, 1 Ligand-Water interactions Metal complexes: X:E.24, X:E.59, X:H.62, H2O.146

Links

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Citation

Chen, H. et al., Construction of thermally robust and porous shrimp ferritin crystalline for molecular encapsulation through intermolecular arginine-arginine attractions. Food Chem (2021)

Release Date

2020-11-25

Peptides

Ferritin: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
A

H
B

I
C

J
D

K
E

L
F

M
A

N
B

O
C

P
D

Q
E

R
F

S
A

T
B

U
C

V
D

W
E

X
F

Ferritin