SMTL ID : 6lbx.1

Crystal structure of HER2 Domain IV and Rb-H2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 6 residues within 4Å: Chain A: R.67 Chain B: L.18, Q.19, R.23, Q.41, N.42 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:Q.19 Hydrogen bonds: B:N.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, T.Y. et al., Computationally-guided design and affinity improvement of a protein binder targeting a specific site on HER2. Comput Struct Biotechnol J (2021)

Release Date

2020-11-18

Peptides

Repebody (Rb-H2): A
Receptor tyrosine-protein kinase erbB-2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Repebody (Rb-H2)

Receptor tyrosine-protein kinase erbB-2