SMTL ID : 6lcb.1

Crystal structure of human Dishevelled1 PDZ domain with its inhibitor NPL3009

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x E83: 2-[[3-[(2E)-2-[1,3-bis(oxidanylidene)-1-phenyl-butan-2-ylidene]hydrazinyl]phenyl]sulfonylamino]benzoic acid(Non-covalent)

E83.1: 7 residues within 4Å: Chain A: F.23, L.24, G.25, I.26, L.83, R.84, V.87 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.23, A:L.83, A:L.83 Hydrogen bonds: A:L.24, A:G.25, A:I.26, A:L.83 pi-Stacking: A:F.23

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: L.16, N.17, M.18, E.19, R.20, H.21, A.50 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.17, A:M.18, A:E.19, A:R.20, A:H.21 Salt bridges: A:H.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yasukochi, S. et al., Crystal structure of human Dishevelled1 PDZ domain with its inhibitor NPL3009. To Be Published

Release Date

2020-11-25

Peptides

Segment polarity protein dishevelled homolog DVL-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Segment polarity protein dishevelled homolog DVL-1

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