SMTL ID : 6lcq.1

Crystal structure of rice defensin OsAFP1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

homo-dimer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: G.1, S.5, H.7, K.51 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.1, A:G.1, A:H.7 Water bridges: A:G.1, A:K.51 Salt bridges: A:H.7, A:K.51 PO4.2: 4 residues within 4Å: Chain A: H.42, G.43 Chain B: H.42, G.43 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:G.43, B:G.43, A:G.43 Salt bridges: B:H.42, A:H.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ochiai, A. et al., Crystal structure of rice defensin OsAFP1 and molecular insight into lipid-binding. J.Biosci.Bioeng. (2020)

Release Date

2020-04-01

Peptides

Defensin-like protein CAL1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Defensin-like protein CAL1