SMTL ID : 6ldl.1

Crystal structure of CYP116B46-N(20-445) from Tepidiphilus thermophilus in complex with HEME

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.38 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 27 residues within 4Å: Chain A: F.61, L.98, V.99, H.106, R.110, F.117, I.252, A.255, A.256, T.259, T.260, A.263, P.301, W.305, R.307, N.358, F.359, G.360, Y.361, A.363, H.364, Q.365, C.366, L.367, G.368, L.371, G.372 19 PLIP interactions: 19 interactions with chain A, Hydrophobic interactions: A:L.98, A:F.117, A:I.252, A:A.255, A:A.256, A:A.263, A:P.301, A:F.359, A:L.371 Hydrogen bonds: A:Y.361 Water bridges: A:R.307, A:H.364, A:H.364 Salt bridges: A:H.106, A:R.110, A:R.307, A:H.364 pi-Stacking: A:F.359 Metal complexes: A:C.366

1 x BCN: BICINE(Non-covalent)

BCN.2: 2 residues within 4Å: Chain A: D.342, F.345 3 PLIP interactions: 3 interactions with chain A Water bridges: A:D.342, A:D.342 Salt bridges: A:D.342

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: V.83, L.87, N.185, Q.195, A.199, V.202 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.185, A:Q.195, A:A.199 Water bridges: A:Q.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, L. et al., Structural insight into the electron transfer pathway of a self-sufficient P450 monooxygenase. Nat Commun (2020)

Release Date

2020-10-28

Peptides

Cytochrome P450: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450