SMTL ID : 6le1.1

Structure of RRM2 domain of DND1 protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: M.21, S.71, H.72, R.73 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.72, A:R.73 GOL.3: 4 residues within 4Å: Chain B: M.21, S.71, H.72, R.73 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.72, B:R.73

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: P.16, R.17 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.17 Salt bridges: A:R.17 SO4.4: 2 residues within 4Å: Chain B: P.16, R.17 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.17 Salt bridges: B:R.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumari, P. et al., Human DND1-RRM2 forms a non-canonical domain swapped dimer. Protein Sci. (2021)

Release Date

2020-12-02

Peptides

Dead end protein homolog 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Dead end protein homolog 1