SMTL ID : 6leo.1

Crystal structure of thiosulfate transporter YeeE from Spirochaeta thermophila

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.52 Å

Oligo State

monomer

Ligands

1 x THJ: THIOSULFATE(Non-covalent)

THJ.1: 9 residues within 4Å: Chain A: K.67, I.221, T.222, G.223, E.241, G.291, G.292, C.293, G.296 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.221, A:T.222, A:G.223 Salt bridges: A:K.67

9 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.2: 5 residues within 4Å: Chain A: L.71, L.159, L.307, W.310, L.311 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.159, A:W.310, A:W.310, A:W.310, A:L.311 OLC.3: 9 residues within 4Å: Chain A: L.11, I.14, V.15, R.18, F.190, C.198, L.201, V.202 Ligands: OLC.4 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.11, A:I.14, A:V.15, A:L.201, A:V.202 Hydrogen bonds: A:R.18 OLC.4: 4 residues within 4Å: Chain A: F.190, C.198, L.201 Ligands: OLC.3 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.201 Salt bridges: A:K.189 OLC.5: 10 residues within 4Å: Chain A: F.23, N.24, A.26, F.27, L.46, N.294, F.298, I.314, I.317, W.321 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.23, A:A.26, A:F.27, A:F.27, A:L.46, A:F.298, A:F.298, A:I.314, A:I.317, A:I.317 OLC.6: 8 residues within 4Å: Chain A: L.228, G.231, F.232, N.235, S.236, P.237, L.238 Ligands: OLC.7 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.232, A:F.232, A:F.232 Hydrogen bonds: A:N.235 OLC.7: 6 residues within 4Å: Chain A: I.249, L.250, A.257, F.262 Ligands: OLC.6, OLC.9 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.249, A:I.249, A:A.257, A:F.262, A:F.262, A:F.262 OLC.8: 6 residues within 4Å: Chain A: I.51, Q.58, Y.146, N.162, W.164, L.168 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.51, A:I.51, A:W.164, A:W.164, A:L.168 Hydrogen bonds: A:Q.58, A:Y.146, A:N.162 OLC.9: 5 residues within 4Å: Chain A: V.99, W.107, F.262, L.264 Ligands: OLC.7 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.107, A:F.262, A:L.264 OLC.10: 7 residues within 4Å: Chain A: I.76, A.124, F.125, W.127, W.128, W.131, I.285 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.128, A:W.128, A:W.128, A:W.128, A:W.128, A:I.285

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tanaka, Y. et al., Crystal structure of a YeeE/YedE family protein engaged in thiosulfate uptake. Sci Adv (2020)

Release Date

2020-09-02

Peptides

Sulf_transp domain-containing protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Sulf_transp domain-containing protein