SMTL ID : 6lg6.1

Crystal Structure of the first bromodomain of human BRD4 in complex with compound BDF-1021

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

1 x EC9: N-[8-oxidanyl-4-(pyridin-2-ylamino)quinolin-2-yl]ethanamide(Non-covalent)

EC9.1: 11 residues within 4Å: Chain A: W.39, P.40, F.41, V.45, L.50, L.52, Y.55, C.94, Y.97, N.98, I.104 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.39, A:F.41, A:V.45, A:L.50, A:L.52, A:L.52, A:I.104 Hydrogen bonds: A:Y.55, A:Y.55, A:N.98, A:N.98 Water bridges: A:P.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, H. et al., Lead-Opt: An efficient tool for structural optimization of lead compounds. To Be Published

Release Date

2020-12-09

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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