SMTL ID : 6lh4.1 (3 other biounits)

Crystal structural of MacroD1-ADPr complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x AR6: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE(Non-covalent)

AR6.1: 22 residues within 4Å: Chain A: S.69, D.70, I.71, A.82, A.83, N.84, G.89, G.90, G.91, G.92, V.93, D.94, C.96, C.176, S.178, T.179, G.180, V.181, F.182, F.216, L.217, D.220 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:D.70, A:D.70, A:I.71, A:N.84, A:G.90, A:G.92, A:V.93, A:D.94, A:D.94, A:S.178, A:S.178, A:G.180, A:V.181, A:F.182, A:D.220 Water bridges: A:D.94, A:D.94, A:C.176, A:L.217 pi-Stacking: A:F.216, A:F.216

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, X. et al., Molecular basis for the MacroD1-mediated hydrolysis of ADP-ribosylation. DNA Repair (Amst) (2020)

Release Date

2020-12-09

Peptides

ADP-ribose glycohydrolase MACROD1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ADP-ribose glycohydrolase MACROD1

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