SMTL ID : 6lhr.2 (1 other biounit)

Crystal structure of the complex between Vesicle Amine Transport-1 and NADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.62 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 25 residues within 4Å: Chain A: N.49, F.50, V.131, N.132, T.135, M.156, G.159, G.160, V.161, A.181, S.182, K.185, Y.200, H.201, P.223, Y.245, A.248, L.251, F.286, H.287, L.288, M.334, Q.335, K.337, N.339 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:V.131, A:T.135, A:V.161 Hydrogen bonds: A:F.50, A:N.132, A:G.160, A:V.161, A:S.182, A:Y.200, A:Y.200, A:P.223, A:Y.245, A:L.251, A:L.288, A:N.339, A:N.339 Water bridges: A:G.159, A:G.162 Salt bridges: A:K.185, A:H.201 pi-Stacking: A:F.50 pi-Cation interactions: A:K.337, A:K.337 NAP.2: 25 residues within 4Å: Chain B: N.49, F.50, V.131, N.132, T.135, M.156, G.159, G.160, V.161, A.181, S.182, K.185, Y.200, H.201, P.223, Y.245, A.248, L.251, F.286, H.287, L.288, M.334, Q.335, K.337, N.339 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:V.131, B:T.135, B:V.161 Hydrogen bonds: B:F.50, B:N.132, B:G.160, B:V.161, B:S.182, B:S.182, B:Y.200, B:Y.245, B:L.251, B:L.288, B:K.337, B:N.339, B:N.339, B:N.339 Water bridges: B:A.51, B:N.132 Salt bridges: B:K.185, B:H.201 pi-Cation interactions: B:K.337

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, S.-Y. et al., Structural insights into vesicle amine transport-1 (VAT-1) as a member of the NADPH-dependent quinone oxidoreductase family. Sci Rep (2021)

Release Date

2021-01-20

Peptides

Synaptic vesicle membrane protein VAT-1 homolog: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Synaptic vesicle membrane protein VAT-1 homolog

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