SMTL ID : 6lig.1

Crystal structure of human Glutamate oxaloacetate transaminase 1 (GOT1) in complex with AH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.62 Å

Oligo State

homo-dimer

Ligands

1 x EE6: 3-[3-(3-methylbut-2-enyl)-4-oxidanyl-phenyl]-5-[[3-(3-methylbut-2-enyl)-4-oxidanyl-phenyl]methylidene]-4-oxidanyl-furan-2-one(Covalent)

EE6.1: 17 residues within 4Å: Chain A: G.37, G.107, T.108, L.111, W.139, N.193, D.221, A.223, Y.224, S.254, S.256, K.257, R.265, F.359 Chain B: Y.69, S.295, N.296 14 PLIP interactions: 13 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.111, A:A.223, A:Y.224, A:K.257, A:F.359 Hydrogen bonds: A:T.108, A:W.139, A:N.193, A:S.256 Water bridges: A:N.193 Salt bridges: A:R.265 pi-Stacking: A:W.139, A:W.139, B:Y.69

1 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PLP.2: 13 residues within 4Å: Chain A: Y.69 Chain B: G.106, G.107, T.108, W.139, N.193, D.221, A.223, Y.224, S.254, S.256, K.257, R.265 12 PLIP interactions: 1 interactions with chain A, 11 interactions with chain B Hydrogen bonds: A:Y.69, B:G.107, B:T.108, B:N.193, B:S.254, B:S.254, B:S.256 Hydrophobic interactions: B:N.193, B:A.223 Salt bridges: B:R.265 pi-Stacking: B:W.139, B:W.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shan, Y., Crystal structure of human Glutamate oxaloacetate transaminase 1 (GOT1) in complex with AH. To Be Published

Release Date

2020-12-16

Peptides

Glutamate oxaloacetate transaminase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutamate oxaloacetate transaminase 1

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