SMTL ID : 6lka.1

Crystal Structure of EV71-3C protease with a Novel Macrocyclic Compounds

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

monomer

Ligands

1 x EGF: ~{N}-[(2~{S})-1-[[(2~{S},3~{S},6~{S},7~{Z},12~{E})-4,9-bis(oxidanylidene)-6-[[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]methyl]-2-phenyl-1,10-dioxa-5-azacyclopentadeca-7,12-dien-3-yl]amino]-3-methyl-1-oxidanylidene-butan-2-yl]-5-methyl-1,2-oxazole-3-carboxamide(Covalent)

EGF.1: 18 residues within 4Å: Chain A: F.26, R.40, H.41, E.72, L.126, N.127, L.128, S.129, T.143, K.144, A.145, G.146, C.148, H.162, I.163, G.164, G.165, N.166 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:E.72, A:L.126, A:L.128 Hydrogen bonds: A:S.129, A:S.129, A:T.143, A:G.146, A:I.163, A:G.165, A:G.165 Water bridges: A:C.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, P. et al., Design, synthesis, and evaluation of a novel macrocyclic anti-EV71 agent. Bioorg.Med.Chem. (2020)

Release Date

2020-06-17

Peptides

3C proteinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3C proteinase

Related Entries With Identical Sequence