SMTL ID : 6lkb.1

Crystal Structure of the peptidylprolyl isomerase domain of Arabidopsis thaliana CYP71.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: D.18, H.20, K.130 Chain B: D.18 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.18, A:K.130 Water bridges: A:D.18, A:D.18, A:D.18

3 x CO: COBALT (II) ION(Non-covalent)

CO.2: 4 residues within 4Å: Chain A: H.13, D.18 Chain B: H.13, D.18 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Metal complexes: A:H.13, A:D.18, A:D.18, B:H.13, B:D.18 CO.4: 3 residues within 4Å: Chain A: H.38, N.41, Y.43 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.38, H2O.6 CO.7: 3 residues within 4Å: Chain B: G.131, M.132, D.133 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.133

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 3 residues within 4Å: Chain A: D.144, K.145, Y.150 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.145 PO4.6: 3 residues within 4Å: Chain B: D.144, K.145, Y.150 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.145, B:Y.150 Water bridges: B:Y.150

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 4 residues within 4Å: Chain B: T.37, H.38, N.41, Y.43 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.41 Salt bridges: B:H.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lakhanpal, S. et al., Structural and functional analyses of the PPIase domain of Arabidopsis thaliana CYP71 reveal its catalytic activity toward histone H3. Febs Lett. (2021)

Release Date

2020-12-16

Peptides

Peptidyl-prolyl cis-trans isomerase CYP71: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peptidyl-prolyl cis-trans isomerase CYP71