SMTL ID : 6ln2.1

Crystal structure of full length human GLP1 receptor in complex with Fab fragment (Fab7F38)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: F.57, N.59, Y.78 Chain C: D.105 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.59

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.243, C.246, C.276, C.279 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.243, A:C.246, A:C.276, A:C.279

1 x 97Y: N-{4-[(R)-(3,3-dimethylcyclobutyl)({6-[4-(trifluoromethyl)-1H-imidazol-1-yl]pyridin-3-yl}amino)methyl]benzene-1-carbonyl}-beta-alanine(Non-covalent)

97Y.3: 14 residues within 4Å: Chain A: R.153, I.358, V.361, F.377, R.378, L.379, K.381, S.382, L.384, T.385, L.431, V.435, N.436, N.437 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:K.381, A:K.381, A:T.385 Hydrogen bonds: A:T.385, A:T.385, A:L.431, A:N.437 Salt bridges: A:R.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, F. et al., Full-length human GLP-1 receptor structure without orthosteric ligands. Nat Commun (2020)

Release Date

2020-03-18

Peptides

Glucagon-like peptide 1 receptor,Rubredoxin,Glucagon-like peptide 1 receptor: A
Fab7F38_light chain: B
Fab7F38_heavy chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Glucagon-like peptide 1 receptor,Rubredoxin,Glucagon-like peptide 1 receptor

Fab7F38_light chain

Fab7F38_heavy chain