SMTL ID : 6lnr.1

Structure of intact chitinase with hevein domain from the plant Simarouba glauca, known for its traditional anti-inflammatory efficacy

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(3-3)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-NAG-NAG.1: 4 residues within 4Å: Chain A: N.104, I.107, N.224 Ligands: CL.7 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.110

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 4 residues within 4Å: Chain A: Q.91, Q.184, N.196, L.199 No protein-ligand interaction detected (PLIP)

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: K.215, N.249, G.250, G.251 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain A: D.67, R.73, T.85, Y.86 Ligand excluded by PLIP CL.7: 5 residues within 4Å: Chain A: V.106, I.107, R.110 Ligands: NAG-NAG-NAG-NAG.1, NAG-NAG-NAG-NAG.1 Ligand excluded by PLIP

2 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.4: 4 residues within 4Å: Chain A: P.79, F.138, K.139, E.140 No protein-ligand interaction detected (PLIP) MG.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Balu, K.E. et al., Structure of intact chitinase with hevein domain from the plant Simarouba glauca, known for its traditional anti-inflammatory efficacy. Int.J.Biol.Macromol. (2020)

Release Date

2020-12-23

Peptides

Class-1 chitinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Class-1 chitinase