SMTL ID : 6loo.1

Crystal Structure of Class IB terpene synthase bound with geranylcitronellyl diphosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

homo-dimer

Ligands

2 x ELR: phosphono [(3~{S},6~{E},10~{E})-3,7,11,15-tetramethylhexadeca-6,10,14-trienyl] hydrogen phosphate(Non-covalent)

ELR.1: 16 residues within 4Å: Chain A: R.54, K.55, F.57, H.58, G.61, Q.84, D.91, D.95, G.211, T.213, H.248, D.252, D.256, I.305, I.309 Ligands: ELU.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.57, A:H.58, A:I.305, A:I.309 Hydrogen bonds: A:D.91 Water bridges: A:R.54, A:R.54, A:K.176, A:K.176, A:D.252, A:D.252 Salt bridges: A:R.54, A:K.55, A:K.55 ELR.3: 17 residues within 4Å: Chain B: R.54, K.55, H.58, G.61, G.62, Y.65, Q.84, D.91, N.92, Y.169, G.211, T.213, L.214, H.248, D.252, I.305, I.309 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:H.58, B:Y.65, B:I.305, B:I.309, B:I.309 Water bridges: B:D.91, B:N.92 Salt bridges: B:R.54, B:K.55, B:K.55

1 x ELU: phosphono [(3~{R},6~{E},10~{E})-3,7,11,15-tetramethylhexadeca-6,10,14-trienyl] hydrogen phosphate(Non-covalent)

ELU.2: 17 residues within 4Å: Chain A: R.54, K.55, F.57, H.58, G.61, G.62, Q.84, D.91, D.95, G.211, T.213, L.214, H.248, D.252, D.256, I.309 Ligands: ELR.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.57, A:H.58, A:L.214, A:I.309 Water bridges: A:R.54, A:R.54, A:D.88, A:D.91, A:K.176, A:K.176 Salt bridges: A:R.54, A:K.55, A:K.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stepanova, R. et al., Characterization of Class IB Terpene Synthase: The First Crystal Structure Bound with a Substrate Surrogate. Acs Chem.Biol. (2020)

Release Date

2020-11-18

Peptides

Tetraprenyl-beta-curcumene synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tetraprenyl-beta-curcumene synthase

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