SMTL ID : 6los.1

Crystal structure of mouse PEDF in complex with heterotrimeric collagen model peptide.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.48 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.215, L.268, K.269, T.270 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.268, A:T.270, A:T.270, A:T.270 Salt bridges: A:R.215 SO4.2: 4 residues within 4Å: Chain A: T.127, R.128, W.146, Q.150 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.128, A:Q.150 Salt bridges: A:R.128 SO4.3: 5 residues within 4Å: Chain A: K.114, S.115, S.116 Chain B: H.18 Chain D: K.12 5 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A, 1 interactions with chain D Salt bridges: B:H.18, D:K.12 Hydrogen bonds: A:S.115, A:S.116 Water bridges: A:K.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kawahara, K. et al., Spatiotemporal regulation of PEDF signaling by type I collagen remodeling. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-09-02

Peptides

Pigment epithelium-derived factor: A
Collagen model peptide, type I, alpha 2: B
Collagen model peptide, type I, alpha 1: C
Collagen model peptide, type I, alpha 1: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
F

C
G

D
H

Pigment epithelium-derived factor

Collagen model peptide, type I, alpha 2

Collagen model peptide, type I, alpha 1

Collagen model peptide, type I, alpha 1