SMTL ID : 6low.1

crystal structure of alpha-momorcharin in complex with GMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.39 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: T.249, N.250, T.252, S.253 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.249 Water bridges: A:T.249, A:N.250, A:S.253, A:S.253, A:K.254

1 x 5GP: GUANOSINE-5'-MONOPHOSPHATE(Non-covalent)

5GP.2: 12 residues within 4Å: Chain A: V.92, Y.93, I.94, F.106, G.132, N.133, Y.134, I.178, A.182, E.183, R.186, E.212 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Y.93, A:I.94, A:I.94, A:N.133, A:Y.134, A:R.186, A:R.186, A:E.212 pi-Stacking: A:Y.93, A:Y.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fan, X. et al., Atomic-resolution structures of type I ribosome inactivating protein alpha-momorcharin with different substrate analogs. Int.J.Biol.Macromol. (2020)

Release Date

2020-11-18

Peptides

Ribosome-inactivating protein momordin I: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribosome-inactivating protein momordin I

Related Entries With Identical Sequence