SMTL ID : 6lpg.1

human VASH1-SVBP complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: Y.79, C.114, H.149, M.165, S.166, R.167 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.79, A:Y.79, A:S.166, A:R.167 Water bridges: A:C.114 Salt bridges: A:H.149, A:R.167 SO4.2: 5 residues within 4Å: Chain A: I.218, E.219, W.220, K.221, H.222 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.220, A:K.221 SO4.3: 1 residues within 4Å: Chain A: R.148 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.148 SO4.4: 2 residues within 4Å: Chain A: R.21, K.24 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.21, A:K.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ikeda, A. et al., The crystal structure of the tetrameric human vasohibin-1-SVBP complex reveals a variable arm region within the structural core. Acta Crystallogr D Struct Biol (2020)

Release Date

2020-10-21

Peptides

Tubulinyl-Tyr carboxypeptidase 1: A
Small vasohibin-binding protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tubulinyl-Tyr carboxypeptidase 1

Small vasohibin-binding protein