- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
ZN.2: 5 residues within 4Å:- Chain A: H.388, H.395, E.429
- Ligands: FAD.1, AKG.3
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:H.388, A:H.395, A:E.429
ZN.5: 5 residues within 4Å:- Chain B: H.388, H.395, E.429
- Ligands: FAD.4, AKG.6
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:H.388, B:H.395, B:E.429
- 2 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)
AKG.3: 12 residues within 4Å:- Chain A: M.89, R.340, T.344, K.355, Y.386, H.388, H.395, N.397, E.429, H.430
- Ligands: FAD.1, ZN.2
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:T.344
- Hydrogen bonds: A:T.344, A:T.344, A:N.397
- Salt bridges: A:R.340, A:K.355, A:H.388, A:H.395, A:H.395, A:H.430
AKG.6: 12 residues within 4Å:- Chain B: M.89, R.340, T.344, K.355, Y.386, H.388, H.395, N.397, E.429, H.430
- Ligands: FAD.4, ZN.5
11 PLIP interactions:11 interactions with chain B- Hydrogen bonds: B:T.344, B:T.344, B:T.344, B:Y.386, B:N.397
- Salt bridges: B:R.340, B:K.355, B:H.388, B:H.395, B:H.395, B:H.430
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yang, J. et al., Structure, substrate specificity, and catalytic mechanism of human D-2-HGDH and insights into pathogenicity of disease-associated mutations. Cell Discov (2021)
- Release Date
- 2021-01-13
- Peptides
- D-2-hydroxyglutarate dehydrogenase, mitochondrial: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
- 2 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yang, J. et al., Structure, substrate specificity, and catalytic mechanism of human D-2-HGDH and insights into pathogenicity of disease-associated mutations. Cell Discov (2021)
- Release Date
- 2021-01-13
- Peptides
- D-2-hydroxyglutarate dehydrogenase, mitochondrial: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B