SMTL ID : 6ls3.1

cubic-shaped crystal of TmFtn mutant-T4FY stimulated by Mg

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.82 Å

Oligo State

homo-24-mer

Ligands

45 x FE: FE (III) ION(Non-covalent)

FE.1: 5 residues within 4Å: Chain A: E.19, E.52, H.55, Q.129 Ligands: FE.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.19, A:E.52, A:H.55 FE.2: 6 residues within 4Å: Chain A: Q.48, E.52, H.55, E.96, E.132 Ligands: FE.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.52, A:E.96, A:E.96, A:E.132 FE.4: 5 residues within 4Å: Chain B: E.19, E.52, H.55, Q.129 Ligands: FE.5 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.19, B:E.52, B:H.55 FE.5: 5 residues within 4Å: Chain B: Q.48, E.52, E.96, E.132 Ligands: FE.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.52, B:E.96, B:E.96 FE.6: 5 residues within 4Å: Chain C: E.19, E.52, H.55, Q.129 Ligands: FE.7 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:E.19, C:E.19, C:E.52, C:H.55 FE.7: 5 residues within 4Å: Chain C: Q.48, E.52, E.96, E.132 Ligands: FE.6 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:E.52, C:E.96, C:E.96, C:E.132 FE.9: 5 residues within 4Å: Chain D: E.19, E.52, H.55, Q.129 Ligands: FE.10 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:E.19, D:E.19, D:E.52, D:H.55 FE.10: 5 residues within 4Å: Chain D: E.52, E.96, Q.129, E.132 Ligands: FE.9 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:E.52, D:E.96, D:E.96, D:E.132 FE.11: 5 residues within 4Å: Chain E: E.19, E.52, H.55, Q.129 Ligands: FE.12 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:E.19, E:E.52, E:H.55 FE.12: 5 residues within 4Å: Chain E: E.52, E.96, Q.129, E.132 Ligands: FE.11 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:E.52, E:E.52, E:E.96, E:E.96 FE.14: 5 residues within 4Å: Chain F: E.19, E.52, H.55, Q.129 Ligands: FE.15 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:E.19, F:E.52, F:H.55 FE.15: 4 residues within 4Å: Chain F: E.52, E.96, E.132 Ligands: FE.14 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:E.52, F:E.96, F:E.96 FE.16: 5 residues within 4Å: Chain G: E.19, E.52, H.55, Q.129 Ligands: FE.17 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:E.19, G:E.19, G:E.52, G:H.55 FE.17: 4 residues within 4Å: Chain G: E.52, E.96, E.132 Ligands: FE.16 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:E.52, G:E.96, G:E.96 FE.18: 4 residues within 4Å: Chain H: E.19, E.52, H.55, Q.129 5 PLIP interactions: 5 interactions with chain H Metal complexes: H:E.19, H:E.19, H:E.52, H:E.52, H:H.55 FE.20: 5 residues within 4Å: Chain I: E.19, E.52, H.55, Q.129 Ligands: FE.21 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:E.19, I:E.52, I:H.55 FE.21: 6 residues within 4Å: Chain I: Q.48, E.52, H.55, E.96, E.132 Ligands: FE.20 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:E.52, I:E.96, I:E.96, I:E.132 FE.23: 5 residues within 4Å: Chain J: E.19, E.52, H.55, Q.129 Ligands: FE.24 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:E.19, J:E.52, J:H.55 FE.24: 5 residues within 4Å: Chain J: Q.48, E.52, E.96, E.132 Ligands: FE.23 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:E.52, J:E.96, J:E.96 FE.25: 5 residues within 4Å: Chain K: E.19, E.52, H.55, Q.129 Ligands: FE.26 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:E.19, K:E.19, K:E.52, K:H.55 FE.26: 5 residues within 4Å: Chain K: Q.48, E.52, E.96, E.132 Ligands: FE.25 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:E.52, K:E.96, K:E.96, K:E.132 FE.28: 5 residues within 4Å: Chain L: E.19, E.52, H.55, Q.129 Ligands: FE.29 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:E.19, L:E.19, L:E.52, L:H.55 FE.29: 5 residues within 4Å: Chain L: E.52, E.96, Q.129, E.132 Ligands: FE.28 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:E.52, L:E.96, L:E.96, L:E.132 FE.30: 5 residues within 4Å: Chain M: E.19, E.52, H.55, Q.129 Ligands: FE.31 3 PLIP interactions: 3 interactions with chain M Metal complexes: M:E.19, M:E.52, M:H.55 FE.31: 5 residues within 4Å: Chain M: E.52, E.96, Q.129, E.132 Ligands: FE.30 4 PLIP interactions: 4 interactions with chain M Metal complexes: M:E.52, M:E.52, M:E.96, M:E.96 FE.33: 5 residues within 4Å: Chain N: E.19, E.52, H.55, Q.129 Ligands: FE.34 3 PLIP interactions: 3 interactions with chain N Metal complexes: N:E.19, N:E.52, N:H.55 FE.34: 4 residues within 4Å: Chain N: E.52, E.96, E.132 Ligands: FE.33 3 PLIP interactions: 3 interactions with chain N Metal complexes: N:E.52, N:E.96, N:E.96 FE.35: 5 residues within 4Å: Chain O: E.19, E.52, H.55, Q.129 Ligands: FE.36 4 PLIP interactions: 4 interactions with chain O Metal complexes: O:E.19, O:E.19, O:E.52, O:H.55 FE.36: 4 residues within 4Å: Chain O: E.52, E.96, E.132 Ligands: FE.35 3 PLIP interactions: 3 interactions with chain O Metal complexes: O:E.52, O:E.96, O:E.96 FE.37: 4 residues within 4Å: Chain P: E.19, E.52, H.55, Q.129 5 PLIP interactions: 5 interactions with chain P Metal complexes: P:E.19, P:E.19, P:E.52, P:E.52, P:H.55 FE.39: 5 residues within 4Å: Chain Q: E.19, E.52, H.55, Q.129 Ligands: FE.40 3 PLIP interactions: 3 interactions with chain Q Metal complexes: Q:E.19, Q:E.52, Q:H.55 FE.40: 6 residues within 4Å: Chain Q: Q.48, E.52, H.55, E.96, E.132 Ligands: FE.39 4 PLIP interactions: 4 interactions with chain Q Metal complexes: Q:E.52, Q:E.96, Q:E.96, Q:E.132 FE.42: 5 residues within 4Å: Chain R: E.19, E.52, H.55, Q.129 Ligands: FE.43 3 PLIP interactions: 3 interactions with chain R Metal complexes: R:E.19, R:E.52, R:H.55 FE.43: 5 residues within 4Å: Chain R: Q.48, E.52, E.96, E.132 Ligands: FE.42 3 PLIP interactions: 3 interactions with chain R Metal complexes: R:E.52, R:E.96, R:E.96 FE.44: 5 residues within 4Å: Chain S: E.19, E.52, H.55, Q.129 Ligands: FE.45 4 PLIP interactions: 4 interactions with chain S Metal complexes: S:E.19, S:E.19, S:E.52, S:H.55 FE.45: 5 residues within 4Å: Chain S: Q.48, E.52, E.96, E.132 Ligands: FE.44 4 PLIP interactions: 4 interactions with chain S Metal complexes: S:E.52, S:E.96, S:E.96, S:E.132 FE.47: 5 residues within 4Å: Chain T: E.19, E.52, H.55, Q.129 Ligands: FE.48 4 PLIP interactions: 4 interactions with chain T Metal complexes: T:E.19, T:E.19, T:E.52, T:H.55 FE.48: 5 residues within 4Å: Chain T: E.52, E.96, Q.129, E.132 Ligands: FE.47 4 PLIP interactions: 4 interactions with chain T Metal complexes: T:E.52, T:E.96, T:E.96, T:E.132 FE.49: 5 residues within 4Å: Chain U: E.19, E.52, H.55, Q.129 Ligands: FE.50 3 PLIP interactions: 3 interactions with chain U Metal complexes: U:E.19, U:E.52, U:H.55 FE.50: 5 residues within 4Å: Chain U: E.52, E.96, Q.129, E.132 Ligands: FE.49 4 PLIP interactions: 4 interactions with chain U Metal complexes: U:E.52, U:E.52, U:E.96, U:E.96 FE.52: 5 residues within 4Å: Chain V: E.19, E.52, H.55, Q.129 Ligands: FE.53 3 PLIP interactions: 3 interactions with chain V Metal complexes: V:E.19, V:E.52, V:H.55 FE.53: 4 residues within 4Å: Chain V: E.52, E.96, E.132 Ligands: FE.52 3 PLIP interactions: 3 interactions with chain V Metal complexes: V:E.52, V:E.96, V:E.96 FE.54: 5 residues within 4Å: Chain W: E.19, E.52, H.55, Q.129 Ligands: FE.55 4 PLIP interactions: 4 interactions with chain W Metal complexes: W:E.19, W:E.19, W:E.52, W:H.55 FE.55: 4 residues within 4Å: Chain W: E.52, E.96, E.132 Ligands: FE.54 3 PLIP interactions: 3 interactions with chain W Metal complexes: W:E.52, W:E.96, W:E.96 FE.56: 4 residues within 4Å: Chain X: E.19, E.52, H.55, Q.129 5 PLIP interactions: 5 interactions with chain X Metal complexes: X:E.19, X:E.19, X:E.52, X:E.52, X:H.55

12 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: E.51, E.128, E.132, Q.135 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.51, A:E.128, A:E.132 MG.8: 4 residues within 4Å: Chain C: E.51, E.128, E.132, Q.135 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:E.51, C:E.51, C:E.132 MG.13: 5 residues within 4Å: Chain E: E.51, E.128, E.131, E.132, Q.135 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:E.51, E:E.51, E:E.132 MG.19: 5 residues within 4Å: Chain H: E.51, E.128, E.131, E.132, Q.135 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:E.51, H:E.128, H:E.132 MG.22: 4 residues within 4Å: Chain I: E.51, E.128, E.132, Q.135 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:E.51, I:E.128, I:E.132 MG.27: 4 residues within 4Å: Chain K: E.51, E.128, E.132, Q.135 3 PLIP interactions: 3 interactions with chain K Metal complexes: K:E.51, K:E.51, K:E.132 MG.32: 5 residues within 4Å: Chain M: E.51, E.128, E.131, E.132, Q.135 3 PLIP interactions: 3 interactions with chain M Metal complexes: M:E.51, M:E.51, M:E.132 MG.38: 5 residues within 4Å: Chain P: E.51, E.128, E.131, E.132, Q.135 3 PLIP interactions: 3 interactions with chain P Metal complexes: P:E.51, P:E.128, P:E.132 MG.41: 4 residues within 4Å: Chain Q: E.51, E.128, E.132, Q.135 3 PLIP interactions: 3 interactions with chain Q Metal complexes: Q:E.51, Q:E.128, Q:E.132 MG.46: 4 residues within 4Å: Chain S: E.51, E.128, E.132, Q.135 3 PLIP interactions: 3 interactions with chain S Metal complexes: S:E.51, S:E.51, S:E.132 MG.51: 5 residues within 4Å: Chain U: E.51, E.128, E.131, E.132, Q.135 3 PLIP interactions: 3 interactions with chain U Metal complexes: U:E.51, U:E.51, U:E.132 MG.57: 5 residues within 4Å: Chain X: E.51, E.128, E.131, E.132, Q.135 3 PLIP interactions: 3 interactions with chain X Metal complexes: X:E.51, X:E.128, X:E.132

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, G. et al., cubic-shaped crystal of TmFtn mutant-T4FY stimulated by Mg. To Be Published

Release Date

2021-01-20

Peptides

Ferritin: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
E

C
A

D
C

E
D

F
F

G
G

H
H

I
B

J
E

K
A

L
C

M
D

N
F

O
G

P
H

Q
B

R
E

S
A

T
C

U
D

V
F

W
G

X
H

Ferritin

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