SMTL ID : 6ls5.1

Structure of human liver FBPase complexed with covalent allosteric inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

homo-tetramer

Ligands

1 x EUF: 2-(ethyldisulfanyl)-1,3-benzothiazole(Non-covalent)

EUF.1: 6 residues within 4Å: Chain A: C.144, L.145 Chain B: M.188, D.213, H.269, V.273 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:V.273

4 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.2: 13 residues within 4Å: Chain A: V.33, E.36, G.37, A.40, G.42, T.43, G.44, E.45, L.46, T.47, K.128, Y.129, M.193 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:T.43, A:T.43, A:T.43, A:G.44, A:E.45, A:L.46, A:T.47, A:T.47, A:Y.129, A:Y.129 Water bridges: A:T.47, A:T.47 Salt bridges: A:K.128 AMP.4: 13 residues within 4Å: Chain B: V.33, E.36, G.37, A.40, G.42, T.43, G.44, E.45, L.46, T.47, K.128, Y.129, M.193 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:T.43, B:T.43, B:T.43, B:G.44, B:E.45, B:L.46, B:T.47, B:T.47, B:Y.129, B:Y.129 Water bridges: B:T.47 Salt bridges: B:K.128 AMP.6: 14 residues within 4Å: Chain C: V.33, E.36, G.37, A.40, G.42, T.43, G.44, E.45, L.46, T.47, K.128, Y.129, V.176, M.193 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:G.37, C:T.43, C:T.43, C:G.44, C:E.45, C:L.46, C:T.47, C:Y.129, C:Y.129 Water bridges: C:T.47, C:R.156 Salt bridges: C:K.128 AMP.8: 14 residues within 4Å: Chain D: V.33, E.36, G.37, A.40, G.42, T.43, G.44, E.45, L.46, T.47, K.128, Y.129, R.156, M.193 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:T.43, D:T.43, D:G.44, D:E.45, D:L.46, D:T.47, D:Y.129, D:Y.129, D:R.156 Water bridges: D:T.47, D:K.128 Salt bridges: D:K.128

4 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: E.113, E.114, D.134, L.136 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.113, A:E.114, A:L.136, H2O.3, H2O.5 MG.5: 4 residues within 4Å: Chain B: E.113, E.114, D.134, L.136 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.113, B:E.114, B:L.136, H2O.9, H2O.12 MG.7: 4 residues within 4Å: Chain C: E.113, D.134, D.137, E.296 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:E.113, C:D.134, C:D.137, C:E.296 MG.9: 4 residues within 4Å: Chain D: E.113, D.134, D.137, E.296 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.113, D:D.134, D:D.137, D:E.296, H2O.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, Y. et al., Identification of the New Covalent Allosteric Binding Site of Fructose-1,6-bisphosphatase with Disulfiram Derivatives toward Glucose Reduction. J.Med.Chem. (2020)

Release Date

2020-05-27

Peptides

Fructose-1,6-bisphosphatase 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Fructose-1,6-bisphosphatase 1