SMTL ID : 6lsa.2 (1 other biounit)

Complex structure of bovine herpesvirus 1 glycoprotein D and bovine nectin-1 IgV

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain B: N.88, E.108, D.166, G.167 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.166

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain B: N.27 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yue, D. et al., Crystal structure of bovine herpesvirus 1 glycoprotein D bound to nectin-1 reveals the basis for its low-affinity binding to the receptor. Sci Adv (2020)

Release Date

2020-06-17

Peptides

Nectin cell adhesion molecule 1: A
Envelope glycoprotein D: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

Nectin cell adhesion molecule 1

Envelope glycoprotein D

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