SMTL ID : 6lt7.1

Crystal structure of human RPP20-RPP25 proteins in complex with the P3 domain of lncRNA RMRP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-2-2-mer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: N.127 Chain B: R.85 Ligands: EDO.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.127 EDO.2: 6 residues within 4Å: Chain A: I.125, N.127 Chain E: R.85, R.86 Chain F: U.18 Ligands: EDO.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.127 EDO.3: 4 residues within 4Å: Chain B: R.85, R.86 Chain D: I.125, N.127 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.127 EDO.4: 4 residues within 4Å: Chain A: Y.39, H.73, H.132 Chain C: A.12 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.39, A:H.132 Water bridges: A:S.104 EDO.5: 1 residues within 4Å: Chain C: G.50 No protein-ligand interaction detected (PLIP) EDO.6: 1 residues within 4Å: Chain E: P.145 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yin, C. et al., Crystal structure of human RPP20-RPP25 proteins in complex with the P3 domain of lncRNA RMRP. J.Struct.Biol. (2021)

Release Date

2021-01-27

Peptides

Ribonuclease P protein subunit p20: AD
Ribonuclease P protein subunit p25: BE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

B
B

E
E

Ribonuclease P protein subunit p20

Ribonuclease P protein subunit p25