SMTL ID : 6luj.1

Crystal structure of the SAMD1 SAM domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.12 Å

Oligo State

homo-pentamer

Ligands

16 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: E.21, Q.22, S.49, I.50, R.51 Ligand excluded by PLIP SO4.2: 5 residues within 4Å: Chain A: F.19, K.57, H.61, H.62 Chain C: K.34 Ligand excluded by PLIP SO4.3: 3 residues within 4Å: Chain A: S.1, P.2, W.5 Ligand excluded by PLIP SO4.4: 5 residues within 4Å: Chain B: E.21, Q.22, S.49, I.50, R.51 Ligand excluded by PLIP SO4.5: 4 residues within 4Å: Chain B: R.41, Y.59, K.64 Chain E: Q.40 Ligand excluded by PLIP SO4.6: 5 residues within 4Å: Chain C: E.21, Q.22, S.49, I.50, R.51 Ligand excluded by PLIP SO4.7: 3 residues within 4Å: Chain C: T.6, V.7, D.32 Ligand excluded by PLIP SO4.8: 2 residues within 4Å: Chain C: T.6, M.8 Ligand excluded by PLIP SO4.9: 4 residues within 4Å: Chain C: R.41, Y.59, K.64 Chain D: Q.40 Ligand excluded by PLIP SO4.10: 5 residues within 4Å: Chain D: E.21, Q.22, S.49, I.50, R.51 Ligand excluded by PLIP SO4.11: 4 residues within 4Å: Chain B: Q.40 Chain D: R.41, Y.59, K.64 Ligand excluded by PLIP SO4.12: 3 residues within 4Å: Chain D: S.1, P.2, W.5 Ligand excluded by PLIP SO4.13: 5 residues within 4Å: Chain E: E.21, Q.22, S.49, I.50, R.51 Ligand excluded by PLIP SO4.14: 6 residues within 4Å: Chain A: Q.40 Chain E: R.41, Y.59, E.60, K.64 Ligands: SO4.15 Ligand excluded by PLIP SO4.15: 4 residues within 4Å: Chain E: Q.40, R.41, Y.59 Ligands: SO4.14 Ligand excluded by PLIP SO4.16: 3 residues within 4Å: Chain E: S.1, P.2, W.5 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stielow, B. et al., The SAM domain-containing protein 1 (SAMD1) acts as a repressive chromatin regulator at unmethylated CpG islands. Sci Adv (2021)

Release Date

2021-02-03

Peptides

Atherin: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Atherin