SMTL ID : 6luq.1

Haloperidol bound D2 dopamine receptor structure inspired discovery of subtype selective ligands

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

monomer

Ligands

1 x GMJ: 4-[4-(4-chlorophenyl)-4-hydroxypiperidin-1-yl]-1-(4-fluorophenyl)butan-1-one(Non-covalent)

GMJ.1: 17 residues within 4Å: Chain A: L.60, F.76, V.77, D.80, V.81, C.84, A.88, I.150, S.163, F.164, F.369, W.373, F.376, F.377, Y.395, T.399, Y.403 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.60, A:F.76, A:V.77, A:I.150, A:W.373, A:F.376, A:F.376 Hydrogen bonds: A:Y.395 Salt bridges: A:D.80 pi-Stacking: A:W.373, A:W.373, A:F.377

4 x OLA: OLEIC ACID(Non-covalent)

OLA.2: 5 residues within 4Å: Chain A: Y.99, T.100, L.173, V.174 Ligands: OLA.4 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.99, A:Y.99, A:T.100, A:V.174, A:V.174 OLA.3: 9 residues within 4Å: Chain A: L.89, C.92, A.93, I.96, R.116, R.117, V.120, M.121, I.124 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.93, A:I.96, A:R.117, A:I.124 Salt bridges: A:R.116 OLA.4: 3 residues within 4Å: Chain A: I.96, V.170 Ligands: OLA.2 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.96, A:V.170 OLA.5: 11 residues within 4Å: Chain A: A.88, L.91, F.168, T.171, Y.175, Y.179, L.182, Q.360, A.366, F.369, I.370 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.91, A:F.168, A:Y.175, A:Y.175, A:Y.175, A:L.182, A:A.366, A:F.369, A:I.370, A:I.370 Hydrogen bonds: A:Q.360

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fan, L. et al., Haloperidol bound D2dopamine receptor structure inspired the discovery of subtype selective ligands. Nat Commun (2020)

Release Date

2020-03-04

Peptides

chimera of D(2) dopamine receptor and Endolysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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chimera of D(2) dopamine receptor and Endolysin

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