SMTL ID : 6lvv.1 (3 other biounits)

N, N-dimethylformamidase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-2-2-mer

Ligands

2 x FE: FE (III) ION(Non-covalent)

FE.1: 4 residues within 4Å: Chain A: Y.399, Y.440, E.521, N.547 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Y.399, A:Y.440, A:E.521, A:E.521, H2O.1 FE.3: 4 residues within 4Å: Chain C: Y.399, Y.440, E.521, N.547 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:Y.399, C:Y.440, C:E.521, C:E.521, H2O.2

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: D.614, H.615, G.650, G.651 Chain B: F.53, Y.55 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.614 EDO.4: 5 residues within 4Å: Chain C: D.614, G.650, G.651 Chain D: F.53, Y.55 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:D.614

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arya, C.K. et al., A 2-Tyr-1-carboxylate Mononuclear Iron Center Forms the Active Site of a Paracoccus Dimethylformamidase. Angew.Chem.Int.Ed.Engl. (2020)

Release Date

2020-08-12

Peptides

N,N-dimethylformamidase large subunit: AC
N,N-dimethylformamidase small subunit: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

N,N-dimethylformamidase large subunit

N,N-dimethylformamidase small subunit

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