SMTL ID : 6lw5.1

Crystal structure of the human formyl peptide receptor 2 in complex with WKYMVm

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x TRP- LYS- TYR- MET- VAL- QXV: TRP-LYS-TYR-MET-VAL-QXV(Non-covalent)

TRP-LYS-TYR-MET-VAL-QXV.1: 23 residues within 4Å: Chain A: F.110, P.113, E.194, H.207, V.210, D.211, L.214, F.215, V.265, T.282, F.283, F.285, L.303, R.306, R.310, W.359, F.362, A.366, M.376, D.386, V.389, N.390, F.397 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:F.110, A:F.110, A:P.113, A:E.194, A:V.210, A:L.214, A:F.215, A:T.282, A:F.283, A:F.285, A:L.303, A:L.303, A:F.362, A:F.397 Hydrogen bonds: A:D.211, A:D.211, A:D.211, A:R.306, A:R.310, A:D.386, A:D.386 Water bridges: A:R.306

2 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 3 residues within 4Å: Chain A: S.320, I.324, L.328 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.328 CLR.3: 5 residues within 4Å: Chain A: N.171, M.248, I.251, V.252, W.255 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.252, A:W.255 Hydrogen bonds: A:N.171

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, T. et al., Structural basis of ligand binding modes at the human formyl peptide receptor 2. Nat Commun (2020)

Release Date

2020-03-25

Peptides

Soluble cytochrome b562,N-formyl peptide receptor 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Soluble cytochrome b562,N-formyl peptide receptor 2