SMTL ID : 6lwr.2 (1 other biounit)

Crystal structure of human NEIL1(K242) bound to duplex DNA containing a cleaved C:T mismatch

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

2 x DC- DG- DT- DC- DC- AD2: DNA (5'-D(*CP*GP*TP*CP*CP*(PDA))-3')(Non-covalent)

DC-DG-DT-DC-DC-AD2.1: 12 residues within 4Å: Chain A: R.118, N.176, Y.263, R.277, T.278 Chain B: T.7, G.8, G.9, A.10, C.11, G.12, G.13 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.176, A:Y.263, A:R.118, A:R.118, A:R.119 Salt bridges: A:R.277, A:H.96, A:R.119 pi-Cation interactions: A:R.118 Hydrophobic interactions: A:F.120 DC-DG-DT-DC-DC-AD2.2: 16 residues within 4Å: Chain A: P.2, E.3, K.54, G.80, M.81, F.120, R.133, Q.168, G.175, N.176, R.277 Chain B: T.1, A.2, G.3, A.4, C.5 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, M. et al., DNA repair glycosylase hNEIL1 triages damaged bases via competing interaction modes. Nat Commun (2021)

Release Date

2021-06-09

Peptides

Endonuclease 8-like 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

Endonuclease 8-like 1

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