SMTL ID : 6lxo.1

TvCyP2 in apo form 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

monomer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: A.6, T.7, R.8, K.14 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.7, A:R.8 Water bridges: A:K.14, A:K.14, A:K.14, A:K.14 Salt bridges: A:K.14 SO4.2: 3 residues within 4Å: Chain A: R.8, V.9, I.10 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.9 Water bridges: A:R.8, A:R.8 Salt bridges: A:R.8 SO4.3: 3 residues within 4Å: Chain A: S.167, Q.168, K.173 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.168, A:Q.168 Water bridges: A:S.169 Salt bridges: A:K.173 SO4.4: 4 residues within 4Å: Chain A: E.154, G.155, M.156, E.157 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.155, A:M.156, A:E.157, A:E.157 SO4.5: 2 residues within 4Å: Chain A: H.67, K.69 3 PLIP interactions: 3 interactions with chain A Water bridges: A:H.67 Salt bridges: A:H.67, A:K.69 SO4.6: 2 residues within 4Å: Chain A: F.20, K.34 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.22

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 5 residues within 4Å: Chain A: Y.99, S.101, K.102, F.103 Ligands: GOL.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.101, A:S.101 Water bridges: A:A.104 GOL.8: 2 residues within 4Å: Chain A: S.101 Ligands: GOL.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.101 Water bridges: A:K.102, A:F.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aryal, S. et al., N-Terminal Segment of TvCyP2 Cyclophilin fromTrichomonas vaginalisIs Involved in Self-Association, Membrane Interaction, and Subcellular Localization. Biomolecules (2020)

Release Date

2020-09-09

Peptides

Peptidyl-prolyl cis-trans isomerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase