SMTL ID : 6lxq.1

TvCyP2 in apo form 3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

5 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 2 residues within 4Å: Chain A: T.7, R.8 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.8 PO4.2: 3 residues within 4Å: Chain A: F.20, K.22, T.32 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.22 PO4.3: 3 residues within 4Å: Chain A: K.57, G.58, M.59 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.57, A:M.59 PO4.4: 4 residues within 4Å: Chain A: P.172, K.173, A.174, K.175 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.172, A:A.174 Water bridges: A:I.176 Salt bridges: A:K.175 PO4.5: 3 residues within 4Å: Chain A: S.167, Q.168, K.173 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.168, A:Q.168 Water bridges: A:S.169 Salt bridges: A:K.173

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 8 residues within 4Å: Chain A: G.70, S.71, P.72, D.86, I.87, T.88, S.89, G.90 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.86 GOL.7: 2 residues within 4Å: Chain A: G.63, K.64 No protein-ligand interaction detected (PLIP) GOL.8: 3 residues within 4Å: Chain A: N.79, F.80, W.141 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.79 Water bridges: A:N.79 GOL.9: 4 residues within 4Å: Chain A: P.115, T.136, V.137, P.138 No protein-ligand interaction detected (PLIP) GOL.10: 2 residues within 4Å: Chain A: D.113, P.138 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.113 GOL.11: 4 residues within 4Å: Chain A: T.111, D.113, P.140, N.143 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.111, A:D.113, A:N.143 Water bridges: A:T.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aryal, S. et al., N-Terminal Segment of TvCyP2 Cyclophilin fromTrichomonas vaginalisIs Involved in Self-Association, Membrane Interaction, and Subcellular Localization. Biomolecules (2020)

Release Date

2020-09-09

Peptides

Peptidyl-prolyl cis-trans isomerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase

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