SMTL ID : 6lxt.1 (1 other biounit)

Structure of post fusion core of 2019-nCoV S2 subunit

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-trimer

Ligands

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.1: 2 residues within 4Å: Chain A: R.109 Ligands: PG4.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.109, A:R.109 PG4.3: 4 residues within 4Å: Chain A: D.108, R.109, E.112 Ligands: PG4.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.112

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: G.37, Q.40, D.41, Q.104 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.41 ZN.4: 1 residues within 4Å: Chain A: D.89 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.89 ZN.5: 1 residues within 4Å: Chain B: D.27 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.27 ZN.6: 1 residues within 4Å: Chain B: D.76 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xia, S. et al., Inhibition of SARS-CoV-2 (previously 2019-nCoV) infection by a highly potent pan-coronavirus fusion inhibitor targeting its spike protein that harbors a high capacity to mediate membrane fusion. Cell Res. (2020)

Release Date

2020-02-26

Peptides

Spike protein S2, Spike protein S2: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Spike protein S2, Spike protein S2

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