SMTL ID : 6lz3.1

Structure of cryptochrome in active conformation

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FAD.1: 22 residues within 4Å: Chain A: Y.226, T.238, S.239, L.241, S.242, L.245, S.284, I.285, L.287, R.288, W.347, D.350, R.353, L.379, D.381, A.382, D.383, S.386, D.387, G.390, W.391, I.394 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:I.394 Hydrogen bonds: A:Y.226, A:S.239, A:L.241, A:S.242, A:S.242, A:S.284, A:D.350, A:D.350, A:D.350, A:R.353, A:D.381, A:D.381, A:D.383, A:S.386 pi-Cation interactions: A:R.353, A:R.353 FAD.2: 22 residues within 4Å: Chain B: Y.226, T.238, S.239, L.241, S.242, L.245, S.284, I.285, L.287, R.288, W.347, D.350, R.353, L.379, D.381, A.382, D.383, S.386, D.387, G.390, W.391, I.394 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:I.394 Hydrogen bonds: B:Y.226, B:S.239, B:L.241, B:S.242, B:S.242, B:S.284, B:D.350, B:D.350, B:D.350, B:R.353, B:D.381, B:D.381, B:D.383, B:S.386 pi-Cation interactions: B:R.353, B:R.353 FAD.3: 22 residues within 4Å: Chain C: Y.226, T.238, S.239, L.241, S.242, L.245, S.284, I.285, L.287, R.288, W.347, D.350, R.353, L.379, D.381, A.382, D.383, S.386, D.387, G.390, W.391, I.394 16 PLIP interactions: 16 interactions with chain C Hydrophobic interactions: C:I.394 Hydrogen bonds: C:S.239, C:L.241, C:S.242, C:S.242, C:S.284, C:D.350, C:D.350, C:R.353, C:D.381, C:D.383, C:D.383, C:S.386, C:D.387 pi-Cation interactions: C:R.353, C:R.353 FAD.4: 22 residues within 4Å: Chain D: Y.226, T.238, S.239, L.241, S.242, L.245, S.284, I.285, L.287, R.288, W.347, D.350, R.353, L.379, D.381, A.382, D.383, S.386, D.387, G.390, W.391, I.394 16 PLIP interactions: 16 interactions with chain D Hydrophobic interactions: D:I.394 Hydrogen bonds: D:S.239, D:L.241, D:S.242, D:S.242, D:S.284, D:D.350, D:D.350, D:R.353, D:D.381, D:D.383, D:D.383, D:S.386, D:D.387 pi-Cation interactions: D:R.353, D:R.353

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shao, K. et al., The oligomeric structures of plant cryptochromes. Nat.Struct.Mol.Biol. (2020)

Release Date

2020-04-29

Peptides

Cryptochrome2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Cryptochrome2