SMTL ID : 6m07.2 (1 other biounit)

Crystal structure of Lp-PLA2 in complex with a novel covalent inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.64 Å

Oligo State

monomer

Ligands

1 x BWO: (2S)-2-[(E)-3-[2-(diethylamino)ethyl-[[4-[4-(trifluoromethyl)-2-[2,2,2-tris(fluoranyl)ethoxy]phenyl]phenyl]methyl]amino]-1-oxidanyl-3-oxidanylidene-prop-1-enyl]pyrrolidine-1-carboxylic acid(Covalent)

BWO.1: 17 residues within 4Å: Chain A: L.54, F.57, L.68, G.99, L.100, G.101, L.106, S.220, F.221, W.245, F.269, H.298, Q.299, F.304, L.316, K.317, L.318 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.57, A:L.100, A:W.245, A:Q.299, A:L.318 Hydrogen bonds: A:L.100, A:F.221, A:Q.299

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, F. et al., Identification of Highly Selective Lipoprotein-Associated Phospholipase A2 (Lp-PLA2) Inhibitors by a Covalent Fragment-Based Approach. J.Med.Chem. (2020)

Release Date

2020-12-30

Peptides

Platelet-activating factor acetylhydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Platelet-activating factor acetylhydrolase

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