- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-1-8-1-1-1-mer
- Ligands
- 1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 30 x PEE: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine(Non-covalent)
- 1 x PPV: PYROPHOSPHATE(Non-covalent)
- 1 x EYR: (6~{E},10~{E},14~{E},18~{E},22~{E},26~{E},30~{R})-2,6,10,14,18,22,26,30-octamethyldotriaconta-2,6,10,14,18,22,26-heptaene(Non-covalent)
EYR.33: 22 residues within 4Å:- Chain B: I.101, L.181, L.184, L.188
- Chain O: M.535, K.536, I.539, F.581, L.584, L.606, L.607, F.614, I.643, L.647, T.717, I.718, C.721, L.722, V.725, A.729, L.732
- Ligands: PPV.32
8 PLIP interactions:7 interactions with chain O, 1 interactions with chain B- Hydrophobic interactions: O:I.539, O:L.607, O:L.607, O:F.614, O:L.647, O:I.718, O:L.722, B:I.101
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Roh, S.H. et al., Cryo-EM and MD infer water-mediated proton transport and autoinhibition mechanisms of V o complex. Sci Adv (2020)
- Release Date
- 2020-11-04
- Peptides
- V-type proton ATPase subunit c': A
V-type proton ATPase subunit c'': B
V0 assembly protein 1: C
V-type proton ATPase subunit e: D
V-type proton ATPase subunit c: EGHIJKLM
Uncharacterized protein YPR170W-B: F
V-type proton ATPase subunit d: N
V-type proton ATPase subunit a, vacuolar isoform: O - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DB
CC
ND
ME
EG
FH
GI
HJ
IK
JL
KM
LF
ON
BO
A - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-1-8-1-1-1-mer
- Ligands
- 1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 30 x PEE: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine(Non-covalent)
- 1 x PPV: PYROPHOSPHATE(Non-covalent)
- 1 x EYR: (6~{E},10~{E},14~{E},18~{E},22~{E},26~{E},30~{R})-2,6,10,14,18,22,26,30-octamethyldotriaconta-2,6,10,14,18,22,26-heptaene(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Roh, S.H. et al., Cryo-EM and MD infer water-mediated proton transport and autoinhibition mechanisms of V o complex. Sci Adv (2020)
- Release Date
- 2020-11-04
- Peptides
- V-type proton ATPase subunit c': A
V-type proton ATPase subunit c'': B
V0 assembly protein 1: C
V-type proton ATPase subunit e: D
V-type proton ATPase subunit c: EGHIJKLM
Uncharacterized protein YPR170W-B: F
V-type proton ATPase subunit d: N
V-type proton ATPase subunit a, vacuolar isoform: O - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DB
CC
ND
ME
EG
FH
GI
HJ
IK
JL
KM
LF
ON
BO
A - Membrane
-
We predict this structure to be a membrane protein.