- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-trimer
- Ligands
- 9 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-BMA.4: 3 residues within 4Å:- Chain A: Y.565, T.928, N.957
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:Y.565
NAG-NAG-BMA.8: 3 residues within 4Å:- Chain B: Y.565, T.928, N.957
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:Y.565
NAG-NAG-BMA.12: 3 residues within 4Å:- Chain C: Y.565, T.928, N.957
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:Y.565
- 33 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Post Translational Modification)
NAG.13: 1 residues within 4Å:- Chain A: N.52
Ligand excluded by PLIPNAG.14: 2 residues within 4Å:- Chain A: N.104, W.129
Ligand excluded by PLIPNAG.15: 4 residues within 4Å:- Chain A: N.147, A.148, C.151, N.154
Ligand excluded by PLIPNAG.16: 1 residues within 4Å:- Chain A: N.275
Ligand excluded by PLIPNAG.17: 2 residues within 4Å:- Chain A: N.472, Q.473
Ligand excluded by PLIPNAG.18: 7 residues within 4Å:- Chain A: Q.473, S.474, F.475, R.497, L.498, L.499, N.514
Ligand excluded by PLIPNAG.19: 1 residues within 4Å:- Chain A: N.520
Ligand excluded by PLIPNAG.20: 2 residues within 4Å:- Chain A: V.524, N.525
Ligand excluded by PLIPNAG.21: 3 residues within 4Å:- Chain A: D.571, N.924, N.925
Ligand excluded by PLIPNAG.22: 3 residues within 4Å:- Chain A: N.562, N.987
- Chain B: N.768
Ligand excluded by PLIPNAG.23: 3 residues within 4Å:- Chain A: D.939, T.990, N.992
Ligand excluded by PLIPNAG.24: 1 residues within 4Å:- Chain B: N.52
Ligand excluded by PLIPNAG.25: 2 residues within 4Å:- Chain B: N.104, W.129
Ligand excluded by PLIPNAG.26: 4 residues within 4Å:- Chain B: N.147, A.148, C.151, N.154
Ligand excluded by PLIPNAG.27: 1 residues within 4Å:- Chain B: N.275
Ligand excluded by PLIPNAG.28: 2 residues within 4Å:- Chain B: N.472, Q.473
Ligand excluded by PLIPNAG.29: 7 residues within 4Å:- Chain B: Q.473, S.474, F.475, R.497, L.498, L.499, N.514
Ligand excluded by PLIPNAG.30: 1 residues within 4Å:- Chain B: N.520
Ligand excluded by PLIPNAG.31: 2 residues within 4Å:- Chain B: V.524, N.525
Ligand excluded by PLIPNAG.32: 3 residues within 4Å:- Chain B: D.571, N.924, N.925
Ligand excluded by PLIPNAG.33: 3 residues within 4Å:- Chain B: N.562, N.987
- Chain C: N.768
Ligand excluded by PLIPNAG.34: 3 residues within 4Å:- Chain B: D.939, T.990, N.992
Ligand excluded by PLIPNAG.35: 1 residues within 4Å:- Chain C: N.52
Ligand excluded by PLIPNAG.36: 2 residues within 4Å:- Chain C: N.104, W.129
Ligand excluded by PLIPNAG.37: 4 residues within 4Å:- Chain C: N.147, A.148, C.151, N.154
Ligand excluded by PLIPNAG.38: 1 residues within 4Å:- Chain C: N.275
Ligand excluded by PLIPNAG.39: 2 residues within 4Å:- Chain C: N.472, Q.473
Ligand excluded by PLIPNAG.40: 7 residues within 4Å:- Chain C: Q.473, S.474, F.475, R.497, L.498, L.499, N.514
Ligand excluded by PLIPNAG.41: 1 residues within 4Å:- Chain C: N.520
Ligand excluded by PLIPNAG.42: 2 residues within 4Å:- Chain C: V.524, N.525
Ligand excluded by PLIPNAG.43: 3 residues within 4Å:- Chain C: D.571, N.924, N.925
Ligand excluded by PLIPNAG.44: 3 residues within 4Å:- Chain A: N.768
- Chain C: N.562, N.987
Ligand excluded by PLIPNAG.45: 3 residues within 4Å:- Chain C: D.939, T.990, N.992
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yu, J. et al., Cryo-EM structures of HKU2 and SADS-CoV spike glycoproteins provide insights into coronavirus evolution. Nat Commun (2020)
- Release Date
- 2020-05-27
- Peptides
- Spike glycoprotein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
AC
C
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-trimer
- Ligands
- 9 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 33 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yu, J. et al., Cryo-EM structures of HKU2 and SADS-CoV spike glycoproteins provide insights into coronavirus evolution. Nat Commun (2020)
- Release Date
- 2020-05-27
- Peptides
- Spike glycoprotein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
AC
C