SMTL ID : 6m1c.1

Crystal structure of RsmD methyltransferase of M. tuberculosis in complex with sinefungin reveals key interactions

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x SFG: SINEFUNGIN(Non-covalent)

SFG.1: 17 residues within 4Å: Chain A: R.23, P.24, T.25, Y.52, A.53, G.54, S.55, E.74, S.75, D.76, S.79, G.100, A.101, V.102, D.120, P.122 Ligands: ACT.2 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.52, A:D.120 Hydrogen bonds: A:T.25, A:T.25, A:T.25, A:Y.52, A:S.55, A:S.75, A:S.75, A:S.79, A:V.102, A:D.120 Water bridges: A:G.56, A:A.103 pi-Stacking: A:Y.52

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 6 residues within 4Å: Chain A: R.23, P.24, T.25, D.120, E.152 Ligands: SFG.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:E.152 Hydrogen bonds: A:E.152 Water bridges: A:T.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bijpuria, S. et al., Crystal structure of RsmD methyltransferase of M. tuberculosis in complex with sinefungin reveals key interactions. To Be Published

Release Date

2021-06-02

Peptides

Possible methyltransferase (Methylase): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Possible methyltransferase (Methylase)

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