SMTL ID : 6m1k.1

USP7 in complex with a novel inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

homo-dimer

Ligands

2 x EZF: methyl 4-[[4-[[3-[4-(aminomethyl)phenyl]-2-methyl-7-oxidanylidene-pyrazolo[4,3-d]pyrimidin-6-yl]methyl]-4-oxidanyl-piperidin-1-yl]methyl]-3-chloranyl-benzoate(Non-covalent)

EZF.1: 19 residues within 4Å: Chain A: Y.17, D.88, V.89, Q.90, Q.144, L.199, M.200, R.201, F.202, M.203, N.211, I.212, K.213, H.249, D.252, N.253, H.254, Y.258, Y.307 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.17, A:Q.144, A:K.213, A:Y.307 Hydrogen bonds: A:V.89, A:Q.90, A:Q.144, A:R.201, A:F.202 Salt bridges: A:H.254 pi-Stacking: A:F.202, A:H.249 EZF.2: 17 residues within 4Å: Chain B: D.88, V.89, Q.90, Q.144, L.199, M.200, R.201, F.202, N.211, I.212, K.213, H.249, D.252, N.253, H.254, Y.258, Y.307 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:Q.144, B:K.213, B:Y.307 Hydrogen bonds: B:D.88, B:V.89, B:Q.90, B:Q.144, B:R.201, B:F.202, B:H.254 Water bridges: B:Y.258 Salt bridges: B:H.254 pi-Stacking: B:F.202, B:H.249

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, M. et al., N-benzylpiperidinol derivatives as novel USP7 inhibitors: Structure-activity relationships and X-ray crystallographic studies. Eur.J.Med.Chem. (2020)

Release Date

2021-03-10

Peptides

Ubiquitin carboxyl-terminal hydrolase 7: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ubiquitin carboxyl-terminal hydrolase 7