SMTL ID : 6m1s.1 (1 other biounit)

The DNA Gyrase B ATP binding domain of PSEUDOMONAS AERUGINOSA in complex with compound 12o

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x EZ9: 3-[5-[8-(ethylamino)-6-fluoranyl-4-[3-(trifluoromethyl)pyrazol-1-yl]-9H-pyrido[2,3-b]indol-3-yl]pyrimidin-2-yl]oxy-2,2-dimethyl-propanoic acid(Non-covalent)

EZ9.1: 14 residues within 4Å: Chain A: V.30, N.33, S.34, E.37, V.58, D.60, R.63, G.64, I.65, P.66, I.81, V.107, T.152, V.154 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.30, A:N.33, A:V.58, A:I.65, A:I.65 Hydrogen bonds: A:D.60, A:D.60, A:R.63, A:R.63, A:G.64, A:T.152 Salt bridges: A:R.63 pi-Cation interactions: A:R.63

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: P.66, V.67, D.68, R.123, H.124 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.67, A:D.68 Salt bridges: A:R.123, A:H.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, Y. et al., Discovery of Pyrido[2,3-b]indole Derivatives with Gram-Negative Activity Targeting Both DNA Gyrase and Topoisomerase IV. J.Med.Chem. (2020)

Release Date

2020-09-02

Peptides

DNA gyrase subunit B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA gyrase subunit B

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