SMTL ID : 6m2u.1

The crystal structure of benzoate coenzyme A ligase double mutant (H333A/I334A) in complex with 2-chloro-1,3-thiazole-5-carboxylate-AMP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

homo-dimer

Ligands

2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 21 residues within 4Å: Chain A: S.176, A.297, G.298, E.299, A.300, D.319, G.320, I.321, G.322, S.323, T.324, E.325, T.343, S.399, D.401, Y.403, Y.413, R.416, K.422, Y.427 Ligands: F0O.2 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:S.176, A:S.176, A:G.298, A:E.299, A:G.322, A:T.324, A:T.324, A:D.401, A:R.416, A:Y.427 Water bridges: A:L.301, A:S.323, A:Y.403, A:K.422, A:Y.427, A:Y.427 Salt bridges: A:K.422 AMP.3: 19 residues within 4Å: Chain B: A.297, G.298, E.299, A.300, D.319, G.320, I.321, G.322, S.323, T.324, T.343, S.399, D.401, Y.403, Y.413, R.416, K.422, Y.427 Ligands: F0O.4 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:G.298, B:E.299, B:T.324, B:D.401, B:Y.403, B:R.416, B:Y.427 Water bridges: B:A.300, B:L.301, B:L.301, B:T.324, B:T.324, B:G.425, B:G.425, B:Y.427, B:Y.427 Salt bridges: B:K.422

2 x F0O: 2-chloranyl-1,3-thiazole-5-carboxylic acid(Non-covalent)

F0O.2: 12 residues within 4Å: Chain A: A.222, Y.223, A.297, G.298, G.322, S.323, T.324, L.327, A.328, A.329, K.422 Ligands: AMP.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.322, A:T.324, A:T.324 Water bridges: A:A.329, A:K.422 Salt bridges: A:K.422 F0O.4: 12 residues within 4Å: Chain B: A.222, Y.223, A.297, G.298, G.322, S.323, T.324, L.327, A.328, A.329, K.422 Ligands: AMP.3 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.322, B:T.324 Salt bridges: B:K.422

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adhikari, K. et al., Chemoenzymatic Synthesis and Biological Evaluation for Bioactive Molecules Derived from Bacterial Benzoyl Coenzyme A Ligase and Plant Type III Polyketide Synthase. Biomolecules (2020)

Release Date

2021-01-13

Peptides

Benzoate-coenzyme A ligase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Benzoate-coenzyme A ligase