SMTL ID : 6m3w.1

Post-fusion structure of SARS-CoV spike glycoprotein

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-trimer

Ligands

24 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.489 Chain C: N.223, S.227 Ligand excluded by PLIP NAG.2: 1 residues within 4Å: Chain A: N.468 Ligand excluded by PLIP NAG.3: 1 residues within 4Å: Chain A: N.453 Ligand excluded by PLIP NAG.4: 1 residues within 4Å: Chain A: N.429 Ligand excluded by PLIP NAG.5: 2 residues within 4Å: Chain A: N.393, S.396 Ligand excluded by PLIP NAG.6: 1 residues within 4Å: Chain A: N.369 Ligand excluded by PLIP NAG.7: 3 residues within 4Å: Chain A: N.12, Q.366 Chain B: V.417 Ligand excluded by PLIP NAG.8: 2 residues within 4Å: Chain A: N.4, F.392 Ligand excluded by PLIP NAG.9: 1 residues within 4Å: Chain B: N.489 Ligand excluded by PLIP NAG.10: 1 residues within 4Å: Chain B: N.468 Ligand excluded by PLIP NAG.11: 1 residues within 4Å: Chain B: N.453 Ligand excluded by PLIP NAG.12: 1 residues within 4Å: Chain B: N.429 Ligand excluded by PLIP NAG.13: 2 residues within 4Å: Chain B: N.393, S.396 Ligand excluded by PLIP NAG.14: 1 residues within 4Å: Chain B: N.369 Ligand excluded by PLIP NAG.15: 3 residues within 4Å: Chain B: N.12, Q.366 Chain C: V.417 Ligand excluded by PLIP NAG.16: 2 residues within 4Å: Chain B: N.4, F.392 Ligand excluded by PLIP NAG.17: 1 residues within 4Å: Chain C: N.489 Ligand excluded by PLIP NAG.18: 1 residues within 4Å: Chain C: N.468 Ligand excluded by PLIP NAG.19: 1 residues within 4Å: Chain C: N.453 Ligand excluded by PLIP NAG.20: 1 residues within 4Å: Chain C: N.429 Ligand excluded by PLIP NAG.21: 2 residues within 4Å: Chain C: N.393, S.396 Ligand excluded by PLIP NAG.22: 1 residues within 4Å: Chain C: N.369 Ligand excluded by PLIP NAG.23: 3 residues within 4Å: Chain A: V.417 Chain C: N.12, Q.366 Ligand excluded by PLIP NAG.24: 2 residues within 4Å: Chain C: N.4, F.392 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fan, X. et al., Cryo-EM analysis of the post-fusion structure of the SARS-CoV spike glycoprotein. Nat Commun (2020)

Release Date

2020-06-03

Peptides

Spike glycoprotein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Spike glycoprotein