SMTL ID : 6m5n.1

Apo-Form Structure of Borneol Dehydrogenase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

homo-tetramer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: H.96, R.97, H.98 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.98 Salt bridges: A:H.98 SO4.5: 3 residues within 4Å: Chain B: H.96, R.97, H.98 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.98 Salt bridges: B:H.98 SO4.9: 3 residues within 4Å: Chain C: H.96, R.97, H.98 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:H.98 Salt bridges: C:H.98 SO4.13: 3 residues within 4Å: Chain D: H.96, R.97, H.98 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:H.98 Salt bridges: D:H.98

12 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 5 residues within 4Å: Chain A: H.96, S.144, Y.157, P.187, Y.188 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.188 Hydrogen bonds: A:S.144 Water bridges: A:S.146 Salt bridges: A:H.96 ACT.3: 8 residues within 4Å: Chain A: T.32, V.33, K.58, S.59, R.60, Y.62, D.82, M.83 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.32, A:R.60 Hydrogen bonds: A:D.82 ACT.4: 2 residues within 4Å: Chain A: L.42, Q.45 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.42 Hydrogen bonds: A:Q.45 ACT.6: 5 residues within 4Å: Chain B: H.96, S.144, Y.157, P.187, Y.188 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:Y.188 Hydrogen bonds: B:S.144, B:Y.157 Water bridges: B:E.145, B:S.146 Salt bridges: B:H.96 ACT.7: 8 residues within 4Å: Chain B: T.32, V.33, K.58, S.59, R.60, Y.62, D.82, M.83 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:T.32, B:R.60 Hydrogen bonds: B:Y.62, B:D.82 ACT.8: 2 residues within 4Å: Chain B: L.42, Q.45 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:L.42 Hydrogen bonds: B:Q.45 ACT.10: 5 residues within 4Å: Chain C: H.96, S.144, Y.157, P.187, Y.188 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:Y.188 Hydrogen bonds: C:S.144, C:Y.157 Water bridges: C:E.145, C:S.146 Salt bridges: C:H.96 ACT.11: 8 residues within 4Å: Chain C: T.32, V.33, K.58, S.59, R.60, Y.62, D.82, M.83 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:T.32, C:R.60 Hydrogen bonds: C:Y.62, C:D.82 ACT.12: 2 residues within 4Å: Chain C: L.42, Q.45 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:L.42 Hydrogen bonds: C:Q.45 ACT.14: 5 residues within 4Å: Chain D: H.96, S.144, Y.157, P.187, Y.188 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:Y.188 Hydrogen bonds: D:S.144 Water bridges: D:S.146 Salt bridges: D:H.96 ACT.15: 8 residues within 4Å: Chain D: T.32, V.33, K.58, S.59, R.60, Y.62, D.82, M.83 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:T.32, D:R.60 Hydrogen bonds: D:D.82 ACT.16: 2 residues within 4Å: Chain D: L.42, Q.45 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:L.42 Hydrogen bonds: D:Q.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Khine, A.A. et al., Structural characterization of borneol dehydrogenase from Pseudomonas sp. TCU-HL1. Acta Crystallogr.,Sect.F (2020)

Release Date

2020-07-15

Peptides

Borneol dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Borneol dehydrogenase